Publications | Eric Libby academic page

Adaptive evolutionary trajectories in complexity: Transitions between unicellularity and facultative differentiated multicellularity

Isaksson, Hanna, Lind, Peter, Libby, Eric

Overexpression of the plastidial pseudo-protease AtFtsHi3 enhances drought tolerance while sustaining plant growth

Mishra, Laxmi S, Cook, Sam D, Kushwah, Sunita, Isaksson, Hanna, Straub, Isabella R, Abele, Miriam, Mishra, Sanatkumar, Ludwig, Christina, Libby, Eric, Funk, Christiane

Modeling endosymbioses: Insights and hypotheses from theoretical approaches

Souza, Lucas Santana, Solowiej-Wedderburn, Josephine, Bonforti, Adriano, Libby, Eric

Fundamental constraints to the logic of living systems

Sol\'e

Emergence and maintenance of stable coexistence during a long-term multicellular evolution experiment

Pineau, Rozenn M, Libby, Eric, Demory, David, Lac, Dung T, Day, Thomas C, Bravo, Pablo, Yunker, Peter J, Weitz, Joshua S, Bozdag, G Ozan, Ratcliff, William C

Ecological resource competition as a driver of metallome evolution

Sobol, Morgan, Rucker, Holly, Libby, Eric, Kacar, Betul, Anbar, Ariel D

Competition and cooperation: The plasticity of bacteria interactions across environments

Solowiej-Wedderburn, Josephine, Pentz, Jennifer T, Lizana, Ludvig, Schroder, Bjorn, Lind, Peter, Libby, Eric

Adapting proximity ligation assay and k-mer enrichment for agnostic life detection

Maggiori, Catherine, Bhadra, Sanchita, Graham, Heather, Anslyn, Eric, Libby, Eric, McLaughlin, Ryan, Ellington, Andy, Johnson, Sarah

Minor variations in multicellular life cycles have major effects on adaptation

Hanna Isaksson, Åke Brännström, Eric Libby

Metabolic compatibility and the rarity of prokaryote endosymbioses

Libby, Eric, Kempes, Christopher P, Okie, Jordan G

Evolutionary consequences of nascent multicellular life cycles

Pentz, Jennifer T, MacGillivray, Kathryn, DuBose, James G, Conlin, Peter L, Reinhardt, Emma, Libby, Eric, Ratcliff, William C

Division of labor promotes the entrenchment of multicellularity

Conlin, Peter L, Goldsby, Heather J, Libby, Eric, Skocelas, Katherine G, Ratcliff, William C, Ofria, Charles, Kerr, Benjamin

Overexpression of the plastidal pseudo-protease AtFtsHi3 confers drought tolerance without penalizing growth

Cook, Sam D, Mishra, Laxmi S, Isaksson, Hanna, Straub, Isabella R, Abele, Miriam, Mishra, Sanatkumar, Ludwig, Christina, Libby, Eric, Funk, Christiane

Multi-species multicellular life cycles

Andersson, Rebecka, Isaksson, Hanna, Libby, Eric

Emergence and Maintenance of Stable Coexistence in Snowflake Yeast Long Term Evolution Experiment

Pineau, Rozenn, Demory, David, Libby, Eric, Bozdag, Gonensin Ozan, Ratcliff, William C

Division of Labor Following the Evolution of Multicellularity Promotes Entrenchment

Conlin, Peter L, Goldsby, Heather, Libby, Eric, Skocelas, Katherine G, Ratcliff, William C, Ofria, Charles, Kerr, Benjamin

Detecting signatures of evolution in in silico polymer populations

Grefenstette, Natalie, Libby, Eric, Kempes, Chris

Clonal development, not aggregation, drives the transition to multicellularity in an isogenic model system

Pentz, Jennifer T, MacGillivray, Kathryn, DuBose, James G, Conlin, Peter L, Reinhardt, Emma, Libby, Eric, Ratcliff, William C

Analysis of Agnostic Biosignatures from Nextgen Chemometrics Data

Wentzell, Zachary, Anslyn, Eric, Bhadra, Sanchita, Fargher, Hazel Anne, Libby, Eric, Kempes, Chris, Graham, Heather, Weng, Margaret Meiqi, Burcar, Bradley, Gadson, Olivia M, others

Towards a more universal life detection strategy

Chou, Luoth, Grefenstette, Natalie, Johnson, Sarah S, Graham, Heather, Mahaffy, Paul, Kempes, Christopher, Elsila, Jamie E, Libby, Eric, Ellington, Andrew, Anslyn, Eric, others

The grayness of the origin of life

Smith, Hillary H, Hyde, Andrew S, Simkus, Danielle N, Libby, Eric, Maurer, Sarah E, Graham, Heather V, Kempes, Christopher P, Sherwood Lollar, Barbara, Chou, Luoth, Ellington, Andrew D, others

The consequences of budding versus binary fission on adaptation and aging in primitive multicellularity

Isaksson, Hanna, Conlin, Peter L, Kerr, Ben, Ratcliff, William C, Libby, Eric

Oxygen suppression of macroscopic multicellularity

Bozdag, G Ozan, Libby, Eric, Pineau, Rozenn, Reinhard, Christopher T, Ratcliff, William C

Lichens and microbial syntrophies offer models for an interdependent route to multicellularity

Libby, Eric, Ratcliff, William C

Ecological advantages and evolutionary limitations of aggregative multicellular development

Pentz, Jennifer T, M\'a

Agnostic approaches to extant life detection on Ocean Worlds

Graham, Heather, Johnson, Sarah, Anslyn, Eric, Conrad, Pamela Gales, Cronin, Leroy, Ellington, Andrew, Cook, Jamie Elsila, Girguis, Peter R, House, Christopher H, Kempes, Chris, others

The Laboratory for Agnostic Biosignatures Project

Johnson, Sarah, Graham, Heather, Anslyn, Eric, Conrad, Pamela Gales, Cronin, Leroy, Ellington, Andrew, Elsila, Jamie, Girguis, Peter R, House, Christopher H, Kempes, Chris, others

Syntrophy emerges spontaneously in complex metabolic systems

Libby, Eric, H\'e

Shortsighted evolution constrains the efficacy of long-term bet hedging

Libby, Eric, Ratcliff, William C

Probabilistic models for predicting mutational routes to new adaptive phenotypes

Libby, Eric, Lind, Peter A

Predicting mutational routes to new adaptive phenotypes

Lind, Peter A, Libby, Eric, Herzog, Jenny, Rainey, Paul B

Oxygen and the evolution of multicellular size: hypothesis testing via long-term experimental evolution

Bozdag, Gonensin Ozan, Libby, Eric, Reinhard, Christopher T, Ratcliff, William C

Modularity of the life cycle

Libby, Eric

Mathematical, Computational, and Data Sciences Explorations for Astrobiology I

Berea, Anamaria, Graham, Heather, Kempes, Chris, Libby, Eric, Johnson, Sarah, Barua, Shiblee Ratan

Future approaches to life detection on Mars

Johnson, SS, Graham, H, Anslyn, E, Brinckerhoff, W, Conrad, P, Cronin, L, Ellington, A, Elsila, J, Girguis, P, Grubisic, A, others

Fragmentation mapping for molecular complexity metrics with flight capable ion traps

Graham, Heather, Mahaffy, Paul, Johnson, Sarah, Cooper, Geoff, Kempes, Chris, Libby, Eric

Environmentally mediated social dilemmas

Estrela, Sylvie, Libby, Eric, Van Cleve, Jeremy, D\'e

Dynamics of beneficial epidemics

Berdahl, Andrew, Brelsford, Christa, Bacco, Caterina De, Dumas, Marion, Ferdinand, Vanessa, Grochow, Joshua A, H\'e

Agnostic approaches to extant life detection

Johnson, SS, Graham, H, Anslyn, E, Conrad, P, Cronin, L, Ellington, A, Elsila, J, Girguis, P, House, C, Kempes, C

Publisher Correction: Programmed cell death can increase the efficacy of microbial bet hedging

Libby, Eric, Driscoll, William W, Ratcliff, William C

Programmed cell death can increase the efficacy of microbial bet hedging

Libby, Eric, Driscoll, William W, Ratcliff, William C

Agnostic Approaches to Life Detection

Johnson, Sarah, Graham, Heather

Vitamin D receptor regulates autophagy in the normal mammary gland and in luminal breast cancer cells

Tavera-Mendoza, Luz E, Westerling, Thomas, Libby, Eric, Marusyk, Andriy, Cato, Laura, Cassani, Raymundo, Cameron, Lisa A, Ficarro, Scott B, Marto, Jarrod A, Klawitter, Jelena, others

Strategic tradeoffs in competitor dynamics on adaptive networks

H\'e

Paradoxes in leaky microbial trade

Kallus, Yoav, Miller, John H, Libby, Eric

Nascent life cycles and the emergence of higher-level individuality

Ratcliff, William C, Herron, Matthew, Conlin, Peter L, Libby, Eric

Drivers of bacterial maintenance and minimal energy requirements

Kempes, Christopher P, van Bodegom, Peter M, Wolpert, David, Libby, Eric, Amend, Jan, Hoehler, Tori

10 The Many Faces of State Space Compression

Wolpert, David, Libby, Eric, Grochow, Joshua A, DeDeo, Simon

Stabilizing multicellularity through ratcheting

Libby, Eric, Conlin, Peter L, Kerr, Ben, Ratcliff, William C

Evolution of regulated phenotypic expression during a transition to multicellularity

Wolinsky, Emma, Libby, Eric

Epigenetic inheritance systems contribute to the evolution of a germline

Lachmann, Michael, Libby, Eric

Courting disaster: How diversification rate affects fitness under risk

Ratcliff, William C, Hawthorne, Peter, Libby, Eric

Bistability in a metabolic network underpins the de novo evolution of colony switching in Pseudomonas fluorescens

Gallie, Jenna, Libby, Eric, Bertels, Frederic, Remigi, Philippe, Jendresen, Christian B, Ferguson, Gayle C, Desprat, Nicolas, Buffing, Marieke F, Sauer, Uwe, Beaumont, Hubertus JE, others

The contribution of private and public information in foraging by Australasian gannets

Machovsky-Capuska, Gabriel E, Hauber, Mark E, Libby, Eric, Amiot, Christophe, Raubenheimer, David

Ratcheting the evolution of multicellularity

Libby, Eric, Ratcliff, William C

Geometry Shapes Evolution of Early Multicellularity

Libby, Eric, Ratcliff, William, Travisano, Michael, Kerr, Ben

Foraging behaviour and habitat use of chick-rearing Australasian Gannets in New Zealand

Machovsky-Capuska, Gabriel E, Hauber, Mark E, Dassis, Mariela, Libby, Eric, Wikelski, Martin C, Schuckard, Rob, Melville, David S, Cook, Willie, Houston, Michelle, Raubenheimer, David

Eco-evolutionary feedback and the tuning of proto-developmental life cycles

Libby, Eric, Rainey, Paul B

A conceptual framework for the evolutionary origins of multicellularity

Libby, Eric, Rainey, Paul B

The evolutionary emergence of stochastic phenotype switching in bacteria

Rainey, Paul B, Beaumont, Hubertus JE, Ferguson, Gayle C, Gallie, Jenna, Kost, Christian, Libby, Eric, Zhang, Xue-Xian

Exclusion rules, bottlenecks and the evolution of stochastic phenotype switching

Libby, Eric, Rainey, Paul B

Demographic variation in community-based MRSA skin and soft tissue infection in Auckland, New Zealand

Ritchie, Stephen R, Fraser, John D, Libby, Eric, Morris, Arthur J, Rainey, Paul B, Thomas, Mark G

The calculus of committee composition

Libby, Eric, Glass, Leon

Marked differences between atrial and ventricular gene-expression remodeling in dogs with experimental heart failure

Cardin, Sophie, Pelletier, Patricia, Libby, Eric, Le Bouter, Sabrina, Xiao, Ling, K\"a

Differential behaviors of atrial versus ventricular fibroblasts: a potential role for platelet-derived growth factor in atrial-ventricular remodeling differences

Burstein, Brett, Libby, Eric, Calderone, Angelino, Nattel, Stanley

Noisy information processing through transcriptional regulation

Libby, Eric, Perkins, Theodore J, Swain, Peter S

Investigations into the design and dissection of genetic networks

Libby, Eric

Contrasting gene expression profiles in two canine models of atrial fibrillation

Cardin, Sophie, Libby, Eric, Pelletier, Patricia, Le Bouter, Sabrina, Shiroshita-Takeshita, Akiko, Le Meur, Nolwenn, L\'e

Atrial fibroblasts are different from ventricular: Explanation of atrial-ventricular remodeling differences in congestive heart failure?

Burstein, Brett, Libby, Eric, Glass, Leon, Calderone, Angelino, Nattel, Stanley

Large-scale in silico and microarray-based identification of direct 1, 25-dihydroxyvitamin D3 target genes

Wang, Tian-Tian, Tavera-Mendoza, Luz Elisa, Laperriere, David, Libby, Eric, Burton MacLeod, Naomi, Nagai, Yoshihiko, Bourdeau, Veronique, Konstorum, Anna, Lallemant, Benjamin, Zhang, Rui, others

Atrial-profibrillatory remodeling: Pangenomic microarrays reveal marked differences in canine gene response between atrial tachycardia and heart failure paradigms

Cardin, S, Libby, E, Pelletier, P, Le Bouter, S, Le Meur, N, Leger, J, Demolombe, S, Ponton, A, Glass, L, Nattel, S

Time-dependent fitness effects can drive bet-hedging

Libby, Eric, Ratcliff, William

Programmed cell death can increase the efficacy of microbial

Libby, Eric, Driscoll, William W, Ratcliff, William C