Publications

Rozenn Pineau, David Demory, Eric Libby, Dung T Lac, Thomas Day, Pablo Bravo, Joshua Weitz, Peter J Yunker, G Ozan Bozdag, William C Ratcliff (2023). Emergence and maintenance of stable coexistence during a long-term multicellular evolution experiment. bioRxiv.

Sam David Cook, Laxmi S Mishra, Hanna Isaksson, Isabella R Straub, Miriam Abele, Sanatkumar Mishra, Christina Ludwig, Eric Libby, Christiane Funk (2022). Overexpression of the plastidal pseudo-protease AtFtsHi3 confers drought tolerance without penalizing growth. bioRxiv.

Rebecka Andersson, Hanna Isaksson, Eric Libby (2022). Multi-species multicellular life cycles. The Evolution of Multicellularity.

Hanna Isaksson, Åke Brännström, Eric Libby (2022). Minor variations in multicellular life cycles have major effects on adaptation. bioRxiv.

Eric Libby, Christopher P Kempes, Jordan Okie (2022). Metabolic compatibility and the rarity of prokaryote endosymbioses. BioRxiv.

Jennifer T Pentz, Kathryn MacGillivray, James G DuBose, Peter L Conlin, Emma Reinhardt, Eric Libby, William C Ratcliff (2022). Evolutionary consequences of nascent multicellular life cycles. bioRxiv.

Jennifer T Pentz, Kathryn MacGillivray, James G DuBose, Peter L Conlin, Emma Reinhardt, Eric Libby, William C Ratcliff (2022). Clonal development, not aggregation, drives the transition to multicellularity in an isogenic model system. bioRxiv.

Zachary Wentzell, Eric Anslyn, Sanchita Bhadra, Hazel Anne Fargher, Eric Libby, Chris Kempes, Heather Graham, Margaret Meiqi Weng, Bradley Burcar, Olivia M Gadson, others (2022). Analysis of Agnostic Biosignatures from Nextgen Chemometrics Data. 2022 Astrobiology Science Conference.

Luoth Chou, Natalie Grefenstette, Sarah S Johnson, Heather Graham, Paul Mahaffy, Christopher Kempes, Jamie E Elsila, Eric Libby, Andrew Ellington, Eric Anslyn, others (2021). Towards a more universal life detection strategy. Bulletin of the American Astronomical Society.

Hillary H Smith, Andrew S Hyde, Danielle N Simkus, Eric Libby, Sarah E Maurer, Heather V Graham, Christopher P Kempes, Barbara Sherwood Lollar, Luoth Chou, Andrew D Ellington, others (2021). The grayness of the origin of life. Life.

Hanna Isaksson, Peter L Conlin, Ben Kerr, William C Ratcliff, Eric Libby (2021). The consequences of budding versus binary fission on adaptation and aging in primitive multicellularity. Genes.

G Ozan Bozdag, Eric Libby, Rozenn Pineau, Christopher T Reinhard, William C Ratcliff (2021). Oxygen suppression of macroscopic multicellularity. Nature communications.

Eric Libby, William C Ratcliff (2021). Lichens and microbial syntrophies offer models for an interdependent route to multicellularity. The Lichenologist.

Jennifer T Pentz, Pedro Márquez-Zacarı́as, G Ozan Bozdag, Anthony Burnetti, Peter J Yunker, Eric Libby, William C Ratcliff (2020). Ecological advantages and evolutionary limitations of aggregative multicellular development. Current Biology.

Heather Graham, Sarah Johnson, Eric Anslyn, Pamela Conrad, Leroy Cronin, Andrew Ellington, Jamie Elsila Cook, Peter R Girguis, Christopher H House, Chris Kempes, others (2020). Agnostic approaches to extant life detection on Ocean Worlds. Ocean Sciences Meeting 2020.

Sarah Johnson, Heather Graham, Eric Anslyn, Pamela Conrad, Leroy Cronin, Andrew Ellington, Jamie Elsila, Peter R Girguis, Christopher H House, Chris Kempes, others (2019). The Laboratory for Agnostic Biosignatures Project. 2019 Astrobiology Science Conference.

Eric Libby, Laurent Hébert-Dufresne, Sayed-Rzgar Hosseini, Andreas Wagner (2019). Syntrophy emerges spontaneously in complex metabolic systems. PLoS computational biology.

Eric Libby, William C Ratcliff (2019). Shortsighted evolution constrains the efficacy of long-term bet hedging. The American Naturalist.

Eric Libby, Peter A Lind (2019). Probabilistic Models for Predicting Mutational Routes to New Adaptive Phenotypes. Bio-protocol.

Peter A Lind, Eric Libby, Jenny Herzog, Paul B Rainey (2019). Predicting mutational routes to new adaptive phenotypes. Elife.

Gonensin Ozan Bozdag, Eric Libby, Christopher T Reinhard, William C Ratcliff (2019). Oxygen and the evolution of multicellular size: hypothesis testing via long-term experimental evolution. 2019 Astrobiology Science Conference.

Eric Libby (2019). Modularity of the life cycle. Nature Ecology & Evolution.

Anamaria Berea, Heather Graham, Chris Kempes, Eric Libby, Sarah Johnson, Shiblee Ratan Barua (2019). Mathematical, Computational, and Data Sciences Explorations for Astrobiology I. 2019 Astrobiology Science Conference.

SS Johnson, H Graham, E Anslyn, W Brinckerhoff, P Conrad, L Cronin, A Ellington, J Elsila, P Girguis, A Grubisic, others (2019). Future approaches to life detection on Mars. Ninth International Conference on Mars.

Heather Graham, Paul Mahaffy, Sarah Johnson, Geoff Cooper, Chris Kempes, Eric Libby (2019). Fragmentation mapping for molecular complexity metrics with flight capable ion traps. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY.

Sylvie Estrela, Eric Libby, Jeremy Van Cleve, Florence Débarre, Maxime Deforet, William R Harcombe, Jorge Peña, Sam P Brown, Michael E Hochberg (2019). Environmentally mediated social dilemmas. Trends in ecology & evolution.

Andrew Berdahl, Christa Brelsford, Caterina De Bacco, Marion Dumas, Vanessa Ferdinand, Joshua A Grochow, Laurent Hébert-Dufresne, Yoav Kallus, Christopher P Kempes, Artemy Kolchinsky, others (2019). Dynamics of beneficial epidemics. Scientific Reports.

SS Johnson, H Graham, E Anslyn, P Conrad, L Cronin, A Ellington, J Elsila, P Girguis, C House, C Kempes, others (2019). Agnostic approaches to extant life detection. Mars Extant Life: What’s Next?.

Eric Libby, William W Driscoll, William C Ratcliff (2018). Publisher Correction: Programmed cell death can increase the efficacy of microbial bet hedging. Scientific reports.

Eric Libby, William W Driscoll, William C Ratcliff (2018). Programmed cell death can increase the efficacy of microbial bet hedging. Scientific reports.

Sarah Johnson, Heather Graham (2018). Agnostic Approaches to Life Detection. 42nd COSPAR Scientific Assembly.

Luz E Tavera-Mendoza, Thomas Westerling, Eric Libby, Andriy Marusyk, Laura Cato, Raymundo Cassani, Lisa A Cameron, Scott B Ficarro, Jarrod A Marto, Jelena Klawitter, others (2017). Vitamin D receptor regulates autophagy in the normal mammary gland and in luminal breast cancer cells. Proceedings of the National Academy of Sciences.

Laurent Hébert-Dufresne, Antoine Allard, Pierre-André Noël, Jean-Gabriel Young, Eric Libby (2017). Strategic tradeoffs in competitor dynamics on adaptive networks. Scientific Reports.

Yoav Kallus, John H Miller, Eric Libby (2017). Paradoxes in leaky microbial trade. Nature communications.

William C Ratcliff, Matthew Herron, Peter L Conlin, Eric Libby (2017). Nascent life cycles and the emergence of higher-level individuality. Philosophical Transactions of the Royal Society B: Biological Sciences.

Christopher P Kempes, Peter M van Bodegom, David Wolpert, Eric Libby, Jan Amend, Tori Hoehler (2017). Drivers of bacterial maintenance and minimal energy requirements. Frontiers in microbiology.

David Wolpert, Eric Libby, Joshua A Grochow, Simon DeDeo (2017). 10 The Many Faces of State Space Compression. From matter to life: information and causality.

Eric Libby, Peter L Conlin, Ben Kerr, William C Ratcliff (2016). Stabilizing multicellularity through ratcheting. Philosophical Transactions of the Royal Society B: Biological Sciences.

Emma Wolinsky, Eric Libby (2016). Evolution of regulated phenotypic expression during a transition to multicellularity. Evolutionary Ecology.

Michael Lachmann, Eric Libby (2016). Epigenetic inheritance systems contribute to the evolution of a germline. Philosophical Transactions of the Royal Society B: Biological Sciences.

William C Ratcliff, Peter Hawthorne, Eric Libby (2015). Courting disaster: How diversification rate affects fitness under risk. Evolution.

Jenna Gallie, Eric Libby, Frederic Bertels, Philippe Remigi, Christian B Jendresen, Gayle C Ferguson, Nicolas Desprat, Marieke F Buffing, Uwe Sauer, Hubertus JE Beaumont, others (2015). Bistability in a metabolic network underpins the de novo evolution of colony switching in Pseudomonas fluorescens. PLoS Biology.

Gabriel E Machovsky-Capuska, Mark E Hauber, Eric Libby, Christophe Amiot, David Raubenheimer (2014). The contribution of private and public information in foraging by Australasian gannets. Animal Cognition.

Eric Libby, William C Ratcliff (2014). Ratcheting the evolution of multicellularity. Science.

Eric Libby, William Ratcliff, Michael Travisano, Ben Kerr (2014). Geometry Shapes Evolution of Early Multicellularity. PLoS Computational Biology.

Gabriel E Machovsky-Capuska, Mark E Hauber, Mariela Dassis, Eric Libby, Martin C Wikelski, Rob Schuckard, David S Melville, Willie Cook, Michelle Houston, David Raubenheimer (2014). Foraging behaviour and habitat use of chick-rearing Australasian Gannets in New Zealand. Journal of Ornithology.

Eric Libby, Paul B Rainey (2013). Eco-evolutionary feedback and the tuning of proto-developmental life cycles. PLoS One.

Eric Libby, Paul B Rainey (2013). A conceptual framework for the evolutionary origins of multicellularity. Physical biology.

Paul B Rainey, Hubertus JE Beaumont, Gayle C Ferguson, Jenna Gallie, Christian Kost, Eric Libby, Xue-Xian Zhang (2011). The evolutionary emergence of stochastic phenotype switching in bacteria. Microbial cell factories.

Eric Libby, Paul B Rainey (2011). Exclusion rules, bottlenecks and the evolution of stochastic phenotype switching. Proceedings of the Royal Society B: Biological Sciences.

Stephen R Ritchie, John D Fraser, Eric Libby, Arthur J Morris, Paul B Rainey, Mark G Thomas (2011). Demographic variation in community-based MRSA skin and soft tissue infection in Auckland, New Zealand. The New Zealand Medical Journal (Online).

Eric Libby, Leon Glass (2010). The calculus of committee composition. PLoS One.

Sophie Cardin, Patricia Pelletier, Eric Libby, Sabrina Le Bouter, Ling Xiao, Stefan Kääb, Sophie Demolombe, Leon Glass, Stanley Nattel (2008). Marked differences between atrial and ventricular gene-expression remodeling in dogs with experimental heart failure. Journal of molecular and cellular cardiology.

Brett Burstein, Eric Libby, Angelino Calderone, Stanley Nattel (2008). Differential behaviors of atrial versus ventricular fibroblasts: a potential role for platelet-derived growth factor in atrial-ventricular remodeling differences. Circulation.

Eric Libby, Theodore J Perkins, Peter S Swain (2007). Noisy information processing through transcriptional regulation. Proceedings of the National Academy of Sciences.

Eric Libby (2007). Investigations into the design and dissection of genetic networks.

Sophie Cardin, Eric Libby, Patricia Pelletier, Sabrina Le Bouter, Akiko Shiroshita-Takeshita, Nolwenn Le Meur, Jean Léger, Sophie Demolombe, André Ponton, Leon Glass, others (2007). Contrasting gene expression profiles in two canine models of atrial fibrillation. Circulation research.

Brett Burstein, Eric Libby, Leon Glass, Angelino Calderone, Stanley Nattel (2006). Atrial fibroblasts are different from ventricular: Explanation of atrial-ventricular remodeling differences in congestive heart failure?. Lippincott Williams & Wilkins.

Tian-Tian Wang, Luz Elisa Tavera-Mendoza, David Laperriere, Eric Libby, Naomi Burton MacLeod, Yoshihiko Nagai, Veronique Bourdeau, Anna Konstorum, Benjamin Lallemant, Rui Zhang, others (2005). Large-scale in silico and microarray-based identification of direct 1, 25-dihydroxyvitamin D3 target genes. Molecular endocrinology.

S Cardin, E Libby, P Pelletier, S Le Bouter, N Le Meur, J Leger, S Demolombe, A Ponton, L Glass, S Nattel (2005). Atrial-profibrillatory remodeling: Pangenomic microarrays reveal marked differences in canine gene response between atrial tachycardia and heart failure paradigms. CIRCULATION.